Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015900914.1_cds_XP_016450921.1_45327
CDS Infomation

[gene=LOC107775683] [db_xref=GeneID:107775683] [protein=aspartyl protease family protein 1-like] [protein_id=XP_016450921.1] [location=join(28481..28782,28859..28994,29289..29524,30394..30618,30740..30875,31140..31213,31297..31396,31471..31531,31683..31754,31844..32097)] [gbkey=CDS]
Sequence

ATGGATAATTCTTGTTGTACTAGTACCTTCACGGTGCGGGTTATCGTGCTGATGGTTTTA
GCTTTACAGTTGCATAATAGTGAAGCGTTTGGGACATTCGGGTTTGATATCCACCACAGG
TATTCTGATCCAGTGAAAGGTATTCTGGACCCTCAAAGATTGCCCCAAAAAGGTAGTATT
GAGTATTATTCAGCTTGGACTCAGCGTGATCACCGGCTAGCTGACACCGGTGATCCTACT
CCGGTGTCAGTCACGTTCGCCAGAGGGGGAAACAAAACTGTTCTACTCAGTTCTCTGGGA
TTTTTGCATTATGCAAATGTGACAGCGGGTACACCCGGGCAACCATTTCTGGTGGCACTT
GACACTGGCAGTGACTTATTTTGGCTACCATGTAACTGCAGCAGCTGTGCCCGTTCACTT
GTGACGGGTTCTGGAAGTCGTATAGATCTCAACATTTACAACCTTAATACATCCTCGACA
AGCAATATTGTTCCCCGCAACAACACTCTGTGTGGACAAGGAAGACAATGTTCAGCGGCA
CATAGTGCATGTGATTATGTAGTTGCATATTTCTCCAATAATACCTCATCTTCAGGAGTA
TTGGTAGAAGACATCTTGCACTTACAAACAGATAATACTCAACAAAAAAGTGTAGAGGCA
CCAATTACACTGGGGTGTGGGATAAAACAAACTGGTGCATTCTTGAATGGTGCTGCTCCC
AATGGTCTATTTGGACTTGGTATGGACAGTATATCTGTTCCTAGCATTTTGGCCAGCAAA
GGTTTTGCTGCAAATTCTTTTTCCATGTGCTTTGGGGCTGATGGTATTGGAAGAATAGAT
TTTGGAGACAAAGGGAGTCCAGGCCAAGGAGAAACACCATTCAATCTTGAACAACCACAC
CAAACTTATAATATTAGCTTCACAGGAATAACTGTGGGAACTAAGAACATTGATGTAGAT
TTCACAGCCATATTTGACACTGGTACCTCATTCACATACTTAAATGATCCACCTTACAGA
GTCATTACAGAGAATTTTAATTCTCAGGCACAAGAGCAACGTATTCAACCTACCGCCCAT
CTTCCTTTTGAGTACTGTTATGGCGTAAGTGCAAATCAGACTACCTTTGGAAATCCTGAT
GTAAATTTGATAATGAAAGATGGCGACCAGTTTTATCTTTTTGATCCAATCATAACATTG
TCATTTCCGGACGGATCCAAGGCATATTGTTTAGCTGTTGTCAAAAGTGGGGATGTCAAC
ATCATTGGACAAAATGTTATGACTGCCTACCTGATGGTGTTTGATCGGGAAAAGATGGTT
TTGGGCTGGAAGCCATCTGATTGTTATGATTCTAAAGAATCCAAAAGTACTACTCTGCCA
ATCAACAAGCAAAAGCCTACTGAAGCGTCTATTCCTACCAATGTGGGGCCTGAGGCCACC
AGAGGAAACAGAAATGGCACTGCTAGGACAACTCCAGCTTTTCCATCATCTACACTTACA
GGAAACCATGGAACACAGTTGAATTCCTTCTTTTGCATGCTAGTGATGACTATGTTTTCC
ACTTTTAGCTATTATTTGATTATTATTTCTTCATGA

Peptide Sequence

PEP ID

XP_016450921.1
PEP Infomation

PREDICTED: aspartyl protease family protein 1-like [Nicotiana tabacum]
Sequence

MDNSCCTSTFTVRVIVLMVLALQLHNSEAFGTFGFDIHHRYSDPVKGILDPQRLPQKGSI
EYYSAWTQRDHRLADTGDPTPVSVTFARGGNKTVLLSSLGFLHYANVTAGTPGQPFLVAL
DTGSDLFWLPCNCSSCARSLVTGSGSRIDLNIYNLNTSSTSNIVPRNNTLCGQGRQCSAA
HSACDYVVAYFSNNTSSSGVLVEDILHLQTDNTQQKSVEAPITLGCGIKQTGAFLNGAAP
NGLFGLGMDSISVPSILASKGFAANSFSMCFGADGIGRIDFGDKGSPGQGETPFNLEQPH
QTYNISFTGITVGTKNIDVDFTAIFDTGTSFTYLNDPPYRVITENFNSQAQEQRIQPTAH
LPFEYCYGVSANQTTFGNPDVNLIMKDGDQFYLFDPIITLSFPDGSKAYCLAVVKSGDVN
IIGQNVMTAYLMVFDREKMVLGWKPSDCYDSKESKSTTLPINKQKPTEASIPTNVGPEAT
RGNRNGTARTTPAFPSSTLTGNHGTQLNSFFCMLVMTMFSTFSYYLIIISS

Transcript Sequence

Gene sequence data has not been registered.